PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 259aa    MW: 29306.9 Da    PI: 7.3515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092005.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0590109120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_010092005.1  90 FSCSVCNKTFNRYNNMQMHM 109
                     89*****************9 PP

2zf-C2H2140.00015175197123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_010092005.1 175 FGCRKCGKPFAVRGDWRTHEKNC 197
                     56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-584112No hitNo description
PROSITE profilePS5015710.42990117IPR007087Zinc finger, C2H2
PfamPF128746.4E-590109No hitNo description
SMARTSM003550.07190112IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-690109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355200138170IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.08E-5158195No hitNo description
Gene3DG3DSA:3.30.160.605.2E-5161195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKIPFFSLLA LAETTISSSN TAIFHHSSLN QPQNDQSLMS RHEEGVTVAL HIGPPNAGSV  60
VRPNHSGGPP IESQYWIPSL AQILVGPTQF SCSVCNKTFN RYNNMQMHMW GHGSQYRKGP  120
ESLRGTKPAS SMLRLSCYCC AEGCKNNIDH PRSRPLKDFR TLQTHYKRKH GAKPFGCRKC  180
GKPFAVRGDW RTHEKNCGKL WFCICRLLKD HVRAFGDGHT PHTAELCEIE KEDADEYDDD  240
DHDGDEEERE NDSFESVVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092005.10.0Protein TRANSPARENT TESTA 1
SwissprotQ9FX681e-105ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLW9QPR10.0W9QPR1_9R
STRINGVIT_01s0011g03100.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-106C2H2-like zinc finger protein